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2.
Johannes C. B. Dietschreit Annika Wagner T. Anh Le Philipp Klein Prof. Dr. Hermann Schindelin Prof. Dr. Till Opatz Prof. Dr. Bernd Engels Prof. Dr. Ute A. Hellmich Prof. Dr. Christian Ochsenfeld 《Angewandte Chemie (Weinheim an der Bergstrasse, Germany)》2020,132(31):12769-12773
The absence of fluorine from most biomolecules renders it an excellent probe for NMR spectroscopy to monitor inhibitor–protein interactions. However, predicting the binding mode of a fluorinated ligand from a chemical shift (or vice versa) has been challenging due to the high electron density of the fluorine atom. Nonetheless, reliable 19F chemical-shift predictions to deduce ligand-binding modes hold great potential for in silico drug design. Herein, we present a systematic QM/MM study to predict the 19F NMR chemical shifts of a covalently bound fluorinated inhibitor to the essential oxidoreductase tryparedoxin (Tpx) from African trypanosomes, the causative agent of African sleeping sickness. We include many protein–inhibitor conformations as well as monomeric and dimeric inhibitor–protein complexes, thus rendering it the largest computational study on chemical shifts of 19F nuclei in a biological context to date. Our predicted shifts agree well with those obtained experimentally and pave the way for future work in this area. 相似文献
3.
Bastian Rsch Thomas Xaver Gentner Holger Elsen Christian A. Fischer Jens Langer Michael Wiesinger Sjoerd Harder 《Angewandte Chemie (Weinheim an der Bergstrasse, Germany)》2019,131(16):5450-5455
Key to the isolation of the first alkyl strontium complex was the synthesis of a strontium hydride complex that is stable towards ligand exchange reactions. This goal was achieved by using the super bulky β‐diketiminate ligand DIPePBDI (CH[C(Me)N‐DIPeP]2, DIPeP=2,6‐diisopentylphenyl). Reaction of DIPePBDI‐H with Sr[N(SiMe3)2]2 gave (DIPePBDI)SrN(SiMe3)2, which was converted with PhSiH3 into [(DIPePBDI)SrH]2. Dissolved in C6D6, the strontium hydride complex is stable up to 70 °C. At 60 °C, H–D isotope exchange gave full conversion into [(DIPePBDI)SrD]2 and C6D5H. Since H–D exchange with D2 is facile, the strontium hydride complex served as a catalyst for the deuteration of C6H6 by D2. Reaction of [(DIPePBDI)SrH]2 with ethylene gave [(DIPePBDI)SrEt]2. The high reactivity of this alkyl strontium complex is demonstrated by facile ethylene polymerization and nucleophilic aromatic substitution with C6D6, giving alkylated aromatic products and [(DIPePBDI)SrD]2. 相似文献
4.
AbstractWe study the inverse problem of parameter identification in noncoercive variational problems that commonly appear in applied models. We examine the differentiability of the set-valued parameter-to-solution map using the first-order and the second-order contingent derivatives. We explore the inverse problem using the output least-squares and the modified output least-squares objectives. By regularizing the noncoercive variational problem, we obtain a single-valued regularized parameter-to-solution map and investigate its smoothness and boundedness. We also consider optimization problems using the output least-squares and the modified output least-squares objectives for the regularized variational problem. We give a complete convergence analysis showing that for the output least-squares and the modified output least-squares, the regularized minimization problems approximate the original optimization problems suitably. We also provide the first-order and the second-order adjoint method for the computation of the first-order and the second-order derivatives of the output least-squares objective. We provide discrete formulas for the gradient and the Hessian calculation and present numerical results. 相似文献
5.
In the literature it was proposed that the treatment of [Fe2(CO)9] in THF resulted, during dissolution, in deep red solutions which should presumably contain labile complexes “Fe(CO)4THF”. This was supported by the fact that such solutions afforded, in the presence of N‐donor ligands like pyridine (py) or pyrazine (pz), metal carbonyl complexes of the formula [Fe(CO)4(py)] and [Fe(CO)4(pz)], respectively. Herein we describe how the true nature of these solutions can be better explained by a valence‐disproportionation reaction of the diiron nonacarbonyl, induced by the donor solvent THF, resulting in the compound [Fe(THF)6][Fe3(CO)11]. The formation of the undecacarbonyl‐triferrate(2–) in such solutions was unambiguously confirmed by IR spectroscopy and by the isolation and crystallization of the corresponding salt (PPN)2[Fe3(CO)11]; its molecular structure was determined, however, already described in the literature. 相似文献
6.
The new transition metal oxo‐thiostannate {[Ni(cyclen)]6[Sn6S12O2(OH)6]} · 2(ClO4) · 19H2O ( 1 ) was prepared under hydrothermal conditions using Na4SnS4 · 14H2O and [Ni(cyclen)](ClO4)2 as reactants. In the crystal structure the rare [Sn6S12O2(OH)6]10– anion is observed, which is composed of SnS2O(OH)3 and SnS4O2 octahedra, and SnS4 tetrahedra sharing edges and corners. The anion is expanded by six Ni2+ centered complexes via Ni–S and Ni–OH bonds. The photocatalytic properties for the visible light driven hydrogen evolution reaction shows that 26.6 mmol · g–1 H2 were evolved after 3 h. 相似文献
7.
Christian R. Zwick Max B. Sosa Hans Renata 《Angewandte Chemie (Weinheim an der Bergstrasse, Germany)》2019,131(52):19030-19034
The GE81112 tetrapeptides are a small family of unusual nonribosomal peptide congeners with potent inhibitory activity against prokaryotic translation initiation. With the exception of the 3‐hydroxy‐l ‐pipecolic acid unit, little is known about the biosynthetic origins of the non‐proteinogenic amino acid monomers of the natural product family. Here, we elucidate the biogenesis of the 4‐hydroxy‐l ‐citrulline unit and establish the role of an iron‐ and α‐ketoglutarate‐dependent enzyme (Fe/αKG) in the pathway. Homology modelling and sequence alignment analysis further facilitate the rational engineering of this enzyme to become a specific 4‐arginine hydroxylase. We subsequently demonstrate the utility of this engineered enzyme in the synthesis of a dipeptide fragment of the antibiotic enduracidin. This work highlights the value of applying a bioinformatics‐guided approach in the discovery of novel enzymes and engineering of new catalytic activity into existing ones. 相似文献
8.
9.
Paulo Debiagi Coskun Yildiz Marcel Richter Jochen Ströhle Bernd Epple Tiziano Faravelli Christian Hasse 《Proceedings of the Combustion Institute》2021,38(3):4053-4061
Coal combustion releases elevated amounts of pollutants to the atmosphere including SOX. During the pyrolysis step, sulfur present in the coal is released to the gas phase as many different chemical species such as H2S, COS, SO2, CS2, thiols and larger tars, also called SOX precursors, as they form SOX during combustion. Understanding the sulfur release process is crucial to the development of reliable kinetic models, which support the design of improved reactors for cleaner coal conversion processes. Sulfur release from two bituminous coals, Colombian hard coal (K1) and American high sulfur coal (U2), were studied in the present work. Low heating rate (LHR) experiments were performed in a thermogravimetric analyzer coupled with mass spectrometry (TG-MS), allowing to track the mass loss and the evolution of many volatile species (CO, CO2, CH4, SO2, H2S, COS, HCl and H2O). High heating rate (HHR) experiments were performed in an entrained flow reactor (drop-tube reactor – DTR), coupled with MS and nondispersive infrared sensor (NDIR). HHR experiments were complemented with CFD simulation of the multidimentional reacting flow field. A kinetic model of coal pyrolysis is employed to reproduce the experiments allowing a comprehensive assessment of the process. The suitability of this model is confirmed for LHR. The combination of HHR experiments with CFD simulations and kinetic modeling revealed the complexity of sulfur chemistry in coal combustion and allowed to better understand of the individual phenomena resulting in the formation of the different SOX precursors. LHR and HHR operating conditions lead to different distribution of sulfur species released, highly-dependent on the gas-phase temperature and residence time. Higher retention of total sulfur in char is observed at LHR (63%) when compared to HHR (37–44%), at 1273 K. These data support the development of reliable models with improved predictability. 相似文献
10.
Dr. Lukas Kaltschnee Dr. Anil P. Jagtap Dr. Jeffrey McCormick Dr. Shawn Wagner Prof. Dr. Louis-S. Bouchard Prof. Dr. Marcel Utz Prof. Dr. Christian Griesinger Dr. Stefan Glöggler 《Chemistry (Weinheim an der Bergstrasse, Germany)》2019,25(47):11031-11035
NMR offers many possibilities in chemical analysis, structural investigations, and medical diagnostics. Although it is broadly used, one of NMR spectroscopies main drawbacks is low sensitivity. Hyperpolarization techniques enhance NMR signals by more than four orders of magnitude allowing the design of new contrast agents. Parahydrogen induced polarization that utilizes the para-hydrogen's singlet state to create enhanced signals is of particular interest since it allows to produce molecular imaging agents within seconds. Herein, we present a strategy for signal enhancement of the carbonyl 13C in amino acids by using parahydrogen, as demonstrated for glycine and alanine. Importantly, the hyperpolarization step is carried out in water and chemically unmodified canonical amino acids are obtained. Our approach thus offers a high degree of biocompatibility, which is crucial for further application. The rapid sample hyperpolarization (within seconds) may enable the continuous production of biologically useful probes, such as metabolic contrast agents or probes for structural biology. 相似文献